Agilent MassHunter Profinder software is a stand-alone program, optimized for batch feature extraction from TOF and Q-TOF based profiling data files and MSD data files.

IDPicker is a tool for viewing and filtering peptide-spectrum-matches (PSMs). It can read and combine results from many different proteomic identification tools, including database search engines and

The MetScape 3 App for Cytoscape provides a bioinformatics framework for the visualization and interpretation of metabolomic and expression profiling data in the context of human metabolism.