TOOL BOX
Databank
Metabolic Pathways Reference
Mass-Spectrometry Data Processing
Metabolomics Raw Data Processing And Analysis
Visualization
Other-Metabolic Models
Biomarker Discovery
High Throughput Data Analysis
BioConductor
The mission of the Bioconductor project is to develop, support, and disseminate free open source software that facilitates rigorous and reproducible analysis of data from current and emerging biologic
ProteoWizard msConvert
ProteoWizard provides a set of open-source, cross-platform software libraries and tools (e.g. msconvert, Skyline, IDPicker, SeeMS) that facilitate proteomics data analysis.
Fat-PTM
A database for examining post-translational modification data.
massQC
A R package which is used for untargeted metabolomics data processing and analysis.
massCleaner
A R package which is used for untargeted metabolomics data cleaning.
massDataset
Provide the mass_dataset class which is specifically developed and designed to organize the rectangular metabolomics data sets into a standard structure. massdataset package also provide a lot of base
massProcesser
A R package which is used for untargeted metabolomics raw data processing and analysis.
metID
A R package which is used for metabolite identification based on in-house database and public database based on accurate mass (m/z), retention time (RT) and/or MS2 spectra.
TidyMass
A R package which is used to manage and organize all the pacakges in tidyMass project.