a R/Bioconductor package for visualizing tree-like structures and associated data.

a tool for estimating an unrooted species tree given a set of unrooted gene trees

a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood

a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures

a fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood

a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models

a computational phylogenetics program for inferring evolutionary trees

an online tool for the display, annotation and management of phylogenetic and other trees

a program for Bayesian phylogenetic analysis of molecular sequences

an application for computing unrooted phylogenetic networks from molecular sequence data

a R package for Analyses of Phylogenetics and Evolution

a package for phylogenetic reconstruction and analysis in the R language

a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood

a R package for phylogenetic comparative biology